Rendering functions

Functions for rendering JBrowserR in various contexts

JBrowseR()

R interface to JBrowse 2 genome browser

JBrowseROutput() renderJBrowseR() JBrowseR_html()

Shiny bindings for JBrowseR

Creating JBrowseR configuration

Functions for creating JBrowseR configuration strings

assembly()

Create an assembly for a custom JBrowse view

track_alignments()

Create an AlignmentsTrack for a custom JBrowse 2 view

track_feature()

Create a FeatureTrack for a custom JBrowse 2 view

track_variant()

Create a VariantTrack for a custom JBrowse 2 view

track_wiggle()

Create a WiggleTrack for a custom JBrowse 2 view

tracks()

Create a set of tracks for a custom JBrowse 2 view

default_session()

Create a default session for a custom JBrowse view

Advanced customization

More advanced customization options

theme()

Create a theme for a custom JBrowse 2 view

json_config()

Read in a JBrowse 2 JSON configuration file

Utilities

serve_data()

Serve a local data directory for use with a browser