mimosa by GMOD

Miniature Model Organism Sequence Aligner

Mimosa allows researchers to run sequence alignment programs on nucleotides or proteins, and request sequences from various sequence databases, all from a friendly web interface.

Dependencies

BLAST, Perl 5, Moose, Catalyst, BioPerl, Bio::GMOD::Blast::Graph, Bio::BLAST, Bio::Chado::Schema and many more awesome CPAN modules.

Install

    git clone git://github.com/GMOD/mimosa.git
    cd mimosa
    perl Build.PL
    ./Build --installdeps # install necessary dependencies
    ./Build

If you have cpanminus installed (it is highly recommended), you can use that to install dependencies as well:

    git clone git://github.com/GMOD/mimosa.git
    cd mimosa
    cpanm --installdeps . # install necessary dependencies
    perl Build.PL
    ./Build

License

Artistic License 2.0

Authors

Jonathan "Duke" Leto jonathan@leto.net
Robert Buels rmb32@cornell.edu

Contact

Generic Model Organism Database Project (gmod-devel@lists.sourceforge.net)
Mimosa mailing list (gmod-mimosa@groups.google.com)

Get Involved

We are always looking for people to help improve Mimosa. You are invited to join #gmod on irc.freenode.net to join the fun!

Download

You can download this project in either zip or tar formats.

You can also clone the project with Git by running:

$ git clone git://github.com/GMOD/mimosa

Screenshots

Main screen
Advanced Options
Mimosa BLAST Report

Thank You

Many thanks to the Sol Genomics Network, Boyce Thompson Institute for Plant Research and the National Science Foundation for helping fund the development of Mimosa.